[1]	Abdolhosseini, F., Azarkhalili, B., Maazallahi, A., Kamal, A., Motahari, S.A., Sharifi-Zarchi, A. & Chitsaz, H. Cell Identity Codes: Understanding Cell Identity from Gene Expression Profiles using Deep Neural Networks. Nature Scientific Reports (Accepted), 2019.
[2]	Kashani, B., Bidgoli, M.H., Motahari, S.A., Sedaghat, N. & Modarressi, M.H. You are What You Eat: Sequence Analysis Reveals How Plant MicroRNAs May Regulate the Human Genome. Computers in Biology and Medicine (Accepted), 2019.
[3]	Yousefi, M.H.N., Goudarzi, M. & Motahari, S.A. Improved Meta-aligner and Minimap2 On Spark. BMC Bioinformatics (Accepted), 2019.
[4]	Nashta-ali, D., Motahari, S.A. & Khalaj, B.H. Breaking Lander-Waterman’s Coverage Bound. PloS one, pages 060384, Public Library of Science, 2016.
[5]	Najafi, A., Janghorbani, S., Motahari, S. & Fatemizadeh, E. Statistical Association Mapping of Population-Structured Genetic Data. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2017.
[6]	Nashta-ali, D., Aliyari, A., Moghadam, A.A., Edrisi, M.A., Motahari, S.A. & Khalaj, B.H. Meta-aligner: long-read alignment based on genome statistics. BMC bioinformatics, 18(1):126, BioMed Central, 2017.
[7]	Motahari, A.S., Bresler, G. & David, N. Information theory of DNA shotgun sequencing. IEEE Transactions on Information Theory, 59(10):6273-6289, IEEE, 2013.